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zhichaozhang/genome-analysis

For genome assembly, annotation, and comparative genomics

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zhichaozhang/ribotricer

A tool for accurately detecting actively translating ORFs from Ribo-seq data

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zhichaozhang/atac-analysis

For ATAC-seq analysis (papers, scripts and tools).

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zhichaozhang/bioinformatic-toolbox

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zhichaozhang/Bioinformatics-with-Python-Cookbook-Second-Edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

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zhichaozhang/biocode

Bioinformatics code libraries and scripts

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zhichaozhang/CUTTag_tutorial

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zhichaozhang/CutTag-tutorial

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zhichaozhang/ATAC-seq

Basic workflow for ATAC-seq analysis

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zhichaozhang/bedtools2

bedtools - the swiss army knife for genome arithmetic

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zhichaozhang/effectR

An R package to call oomycete effectors

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zhichaozhang/dl2bioinformatics

Deep learning with bioinformatics

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zhichaozhang/pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

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zhichaozhang/Rosalind 练习题-01

Solutions to Rosalind Bioinformatics Problems

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zhichaozhang/Rosalind 练习题-02

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zhichaozhang/bio-pipeline

My collection of light bioinformatics analysis pipelines for specific tasks

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zhichaozhang/plastid

Position-wise analysis of sequencing and genomics data

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zhichaozhang/jcvi

Python library to facilitate genome assembly, annotation and comparative genomics

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zhichaozhang/atac-seq-pipeline

ENCODE ATAC-seq pipeline

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zhichaozhang/getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science