# atac-analysis

**Repository Path**: biozzc/atac_analysis

## Basic Information

- **Project Name**: atac-analysis
- **Description**: For ATAC-seq analysis (papers, scripts and tools).
- **Primary Language**: Shell
- **License**: GPL-3.0
- **Default Branch**: main
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2021-09-15
- **Last Updated**: 2022-04-02

## Categories & Tags

**Categories**: Uncategorized

**Tags**: ATAC-seq

## README

## ATAC-seq summary

Some useful blogs, papers and scripts for ATAC-seq when I used during my own projects:
- [ChIP-seq-analysis](https://github.com/crazyhottommy/ChIP-seq-analysis) (Tang Ming)
- [ATAC-seq data analysis: from FASTQ to peaks](https://yiweiniu.github.io/blog/2019/03/ATAC-seq-data-analysis-from-FASTQ-to-peaks/) (yiweiniu blog)
- [ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation](https://epigeneticsandchromatin.biomedcentral.com/articles/10.1186/s13072-020-00342-y) (normalization analysis)
- [From reads to insight: a hitchhiker’s guide to ATAC-seq data analysis](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-1929-3#Fig1) (review, 2020)
- [pyflow-ATACseq](https://github.com/crazyhottommy/pyflow-ATACseq) (snakemake processing)