# hires-utils

**Repository Path**: zhuakexi/hires-utils

## Basic Information

- **Project Name**: hires-utils
- **Description**: scripts for hires pipline
- **Primary Language**: Python
- **License**: Not specified
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2020-09-12
- **Last Updated**: 2025-06-17

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README

# hires-utils
### scHi-C data wrangling tools
## Installation
No package now, use git.
```
git clone https://github.com/zhuakexi/hires-utils.git
```
## Usage
Unix style, with subcommand.
Works with python3.
```
usage: hires [-h] command ...

Functions for hires pipline

optional arguments:
  -h, --help      show this help message and exit

These are sub-commands:
  command
    clean_leg     clean promiscuous legs that contacts with multiple legs
    clean_splicing
                  clean exon splicing from mRNA in contact file
    align         caculate rmsd between .3dg replicates
    clean_isolated
                  remove isolated contacts according to L-0.5 distance
```
Type "subcommand -h" for details.