# dyno

**Repository Path**: bioxfu/dyno

## Basic Information

- **Project Name**: dyno
- **Description**: No description available
- **Primary Language**: Unknown
- **License**: MIT
- **Default Branch**: master
- **Homepage**: None
- **GVP Project**: No

## Statistics

- **Stars**: 0
- **Forks**: 0
- **Created**: 2021-02-19
- **Last Updated**: 2024-08-22

## Categories & Tags

**Categories**: Uncategorized

**Tags**: None

## README


<!-- README.md is generated from README.Rmd. Please edit that file -->

[![Build
Status](https://travis-ci.org/dynverse/dynplot.svg?branch=master)](https://travis-ci.org/dynverse/dynplot)
[![codecov](https://codecov.io/gh/dynverse/dyno/branch/master/graph/badge.svg)](https://codecov.io/gh/dynverse/dyno)
[![AppVeyor Build
Status](https://ci.appveyor.com/api/projects/status/github/dynverse/dyno?branch=master&svg=true)](https://ci.appveyor.com/project/dynverse/dyno)
[**ℹ️ Tutorials**](https://dynverse.org)     [**ℹ️ Reference
documentation**](https://dynverse.org/reference)
<br><img src="man/figures/dyno.gif" align="right" width="150px" />

# Inferring trajectories using dyno

The **dyno** package offers **end-users** a complete TI pipeline. It
features:

  - a uniform interface to 60 [TI
    methods](https://github.com/dynverse/dynmethods#list-of-included-methods),
  - an [interactive guideline
    tool](https://github.com/dynverse/dynguidelines#selecting-the-most-optimal-ti-methods)
    to help the user select the most appropriate method,
  - [streamlined interpretation and visualisation of
    trajectories](https://dynverse.org/reference/dynplot/plot_trajectory/plot_dimred/#examples),
    including colouring by gene expression or clusters, and
  - downstream analyses such as the [identification of potential marker
    genes](https://dynverse.org/reference/dynplot/plot_trajectory/plot_heatmap/#examples).

**For information on how to use dyno, check out the installation
instructions, tutorials and documentation at
[dynverse.org](https://dynverse.org)**

![](man/figures/toolkit.png)

## Latest changes

Check out `news(package = "dyno")` or [NEWS.md](NEWS.md) for a full list
of changes.

<!-- This section gets automatically generated from inst/NEWS.md -->

### Recent changes in dyno 0.1.1 (06-04-2019)

  - BUGFIX: Fixed example dataset

  - MINOR CHANGE: Bumping version requirement of dynmethods to 1.0.1.

### Recent changes in dyno 0.1.0 (29-03-2019)

  - Initial beta release of
dyno

## Dynverse dependencies

<!-- Generated by "update_dependency_graphs.R" in the main dynverse repo -->

![](man/figures/dependencies.png)